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Services provided

The platform offers expression-, genomics- and epigenetics-profiling services, from quality check of starting material up to data analysis. For each application, a dedicated data sheet below describes the services provided by the platform and gives advices regarding sample preparation. The platform also organizes numerous trainings on deep sequencing technology and bioinformatics.

Product sheets

Sequencing services

ChIP-seq ( Icon english (519.2 KB)  or  Icon french (694.6 KB) )

RNA-seq ( Icon english (633.4 KB)  or Icon french (691.0 KB) )

Small RNA-seq ( Icon english (415.6 KB)  or  Icon french (575.2 KB) )

DNA-seq ( Icon english (412.4 KB)  or  Icon french (582.2 KB) )

Sequencing your own libraries ( Icon english (399.5 KB)  or  Icon french (485.5 KB) )

Microarray services

Transcriptome profiling ( Icon english (677.0 KB)  or  Icon french (761.3 KB) )

Access to Fluidigm system

Q-PCR analysis on total RNA ( Icon english (515.6 KB)  or Icon french (648.6 KB) )

Q-PCR analysis on single cells ( Icon english (427.6 KB)  or Icon french (435.3 KB) )

Trainings

Our platform is involved in several school programs and bioinformatics trainings on a regular basis.

 

Practical and theoretical courses taught in 2017

« Introduction to Galaxy », « Analyzing ChIP-seq data », « Introduction to Ensembl/BioMart » and « RNA sequencing », IGBMC PhD Program

« Introduction to Next Generation Sequencing data analysis », CNRS training

« Handling and QC of aligned NGS data », « QC and handling of raw NGS data » and « Introduction to Ensembl/Biomart », DU Séquençage haut débit et maladies rares, University of Dijon. 

European Galaxy Developer Workshop, ELIXIR-IFB event, Illkirch

 

Practical and theoretical courses taught in 2016

« Introduction to R software and language », « Introduction to Galaxy », « Analyzing ChIP-seq data » and « Introduction to Ensembl/BioMart », IGBMC PhD Program

« RNA-seq data analysis », MitoCross and NetRNA Labex, University of Strasbourg

« Introduction to Next Generation Sequencing data analysis », CNRS training

« Handling and QC of aligned NGS data », « QC and handling of raw NGS data » and « Introduction to Ensembl/Biomart », DU Séquençage haut débit et maladies rares, University of Dijon. 

« ChIP-seq data analysis », 5th bioinformatics school AVIESAN-IFB, Roscoff

« G4B : Galaxy4Bioinformatics », IFB event, Lyon

 

Practical and theoretical courses taught in 2015

« Introduction to Next Generation Sequencing data analysis », CNRS training

« Introduction to Ensembl/Biomart », DU Séquençage haut débit et maladies rares, University of Dijon.

« Deep sequencing technology and applications », Télécom Physique Strasbourg

« RNA and miRNA sequencing and data analysis », « Introduction to Galaxy », « Analyzing ChIP-seq data » and « Introduction to Ensembl/BioMart », IGBMC PhD program

« Galaxy 4 Bioinformaticians », workshop on Galaxy dedicated to bioinformaticians

«  How to use Galaxy to create a web interface for tools run on the command lines », JDEV 2015

« Introduction to Galaxy » , Nancy University

« ChIP-seq data analysis », 4th bioinformatics school AVIESAN-IFB, Roscoff

 

Practical and theoretical courses taught in 2014

« Introduction to next generation sequencing data analysis », CNRS training

« Handling and QC of aligned NGS data », « QC and handling of raw NGS data » and « Introduction to Ensembl/Biomart », DU Séquençage haut débit et maladies rares, University of Dijon. 

« Deep sequencing applications», Licence Pro Biotechnologies, IUT Colmar

« Deep sequencing technology and applications » and « DNAseq data analysis », Télécom Physique Strasbourg

« RNA and miRNA sequencing and comparison with microarray technology » and « Analysis of chIP-seq data using Galaxy », IGBMC PhD Program

« Genome Browser, introduction to Ensembl/BioMart », IGBMC workshop

« Introduction to R », IGBMC workshop

Last update on Thu 18 May 2017

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