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training:dudijon:galaxy [2021/12/14 18:37] slegras [Introduction to Galaxy] |
training:dudijon:galaxy [2022/12/09 15:37] (current) slegras |
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| ==== - Import files from your computer to Galaxy ==== | ==== - Import files from your computer to Galaxy ==== | ||
| - | - Download the file “**sample.bed.gz**” following this [[https://seafile.igbmc.fr/d/345d7581237d4295bf2c/|link]] and upload it to Galaxy. | + | - Download the file “**sample.bed.gz**” following this [[https://seafile.igbmc.fr/d/1adaad8f80394182a784/|link]] and upload it to Galaxy. |
| * The genome is: Mouse (mm9) | * The genome is: Mouse (mm9) | ||
| * The format is: bed | * The format is: bed | ||
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| ==== - Running a tool ==== | ==== - Running a tool ==== | ||
| - | - Download the two files **CRN-107_11-R1.fastq.gz** and **CRN-107_11-R2.fastq.gz** following this [[https://seafile.igbmc.fr/d/345d7581237d4295bf2c/|link]]. | + | - Download the two files **CRN-107_11-R1.fastq.gz** and **CRN-107_11-R2.fastq.gz** following this [[https://seafile.igbmc.fr/d/1adaad8f80394182a784/|link]]. |
| - Import them to your history called “DNA-seq data analysis” | - Import them to your history called “DNA-seq data analysis” | ||
| * The genome is: Human (hg19) | * The genome is: Human (hg19) | ||
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| * CRN-107_11-R1.fastq | * CRN-107_11-R1.fastq | ||
| * CRN-107_11-R2.fastq | * CRN-107_11-R2.fastq | ||
| - | * CaptureDesign_chr4.bed (download it from [[https://seafile.igbmc.fr/d/345d7581237d4295bf2c/|here]]) | + | * CaptureDesign_chr4.bed (download it from [[https://seafile.igbmc.fr/d/1adaad8f80394182a784/|here]]) |
| Import missing files from the data library "**DNA-seq test datasets**" | Import missing files from the data library "**DNA-seq test datasets**" | ||
