Introduction to RNA-seq and ChIP-seq data analysis

2023, 05/31 and 06/01-02

1 Illumina Sequencing technology

2 Introduction to Galaxy

3 RNA sequencing : library preparation and experimental design

4 Introduction to practical sessions

5 Quality control of Illumina data

6 NGS read mapping

7 Analysis of RNAseq data

8 Data mining with Ensembl Biomart

9 Functional analysis of RNAseq data

10 ChIP-sequencing: library preparation and experimental design

11 Analysis of ChIP-seq data

12 NGS analysis automatization: Galaxy workflows

13 Correlation of RNA-seq and ChIP-seq data